Mitochondrial Physiology

Mitochondria are fundamental to life. In what has been termed “the fire of life”, mitochondria use O2 and metabolic fuels to produce most of the ATP cells need to function during the process of oxidative phosphorylation (OXPHOS). Mitochondria are also a major source of reactive oxygen species (ROS), which are produced when electrons leak from their usual route through the electron transport system (ETS). ROS were long regarded as harmful byproducts of mitochondria that damage cell components, but they are now known to have many important roles in cell signalling. There is growing appreciation that the functions of mitochondria in energy production, ROS homeostasis, and various other cellular process underlie aerobic performance, responses to environmental change, and many other key features of animal biology.

Oxidative phosphorylation (OXPHOS) is a key element of bioenergetics that couples the series of redox reactions that drive electrons through the electron transport system (ETS) and consume O2 to the synthesis of ATP. The breakdown of metabolic fuels generates electron donors that feed electrons into the ETS at complex I (from NADH), at complex II (from succinate), or from other sources. Electron flow converges at coenzyme Q (the ‘Q-junction’). The rates and maximum capacities for electron transport through each pathway can change under different conditions and affect ATP synthesis and ROS production.

Aerobic performance is determined by the capacity of mitochondria in active tissues to consume O2 and produce ATP. This is determined by both the abundance of mitochondria within active tissues (‘mitochondrial quantity’) and the functional properties of those mitochondria (‘mitochondrial quality’). We use various techniques to examine how changes in mitochondrial quantity and quality contribute to variation in aerobic performance and the ability to cope in challenging environments.


Mitochondrial physiology is studied by high-resolution respirometry and fluorometry using various preparations, including isolated mitochondria (top left; former PDF Neal Dawson shown) and permeabilized tissues. Specific mitochondrial substrates, uncouplers, and inhibitors are used to examine different states of leak, oxidative phosphorylation, and electron transport (right) (Scott et al. 2018).

Mitochondrial abundance and structure can be measured using electron microscopy. Striated muscles contain distinct subpopulations of mitochondria: subsarcolemmal mitochondria (SSM) near the cell membrane and capillaries (shown with red shading), and intermyofibrillar mitochondria (IMM) deeper in the cell.

We are using a comparative approach with deer mice to examine how phenotypic plasticity and/or evolutionary adaptation to high altitude has altered mitochondrial physiology (see Comparative & Evolutionary Physiology for a description of our lab colonies and experimental manipulations). Our work has shown that exposure to the cold and hypoxic environment at high altitude leads to plastic adjustments in mitochondrial physiology that increase oxidative capacity in thermogenic tissues. High-altitude populations of deer mice have also evolved increased oxidative capacity and mitochondrial O2 affinity in skeletal muscles compared to low-altitude populations. Ongoing research is working to uncover the mechanisms of these changes, to examine how changes in mitochondrial physiology contribute to ROS homeostasis, and to elucidate the signalling mechanisms responsible for adjusting mitochondrial metabolism.

High-altitude deer mice have evolved more oxidative skeletal muscles than low-altitude mice and exhibit mitochondrial plasticity during exposure to cold hypoxia, including increases in mitochondrial abundance and OXPHOS capacity along with mitochondrial uncoupling (likely to augment heat generation) (Mahalingam et al. 2020). Figure created by Grant McClelland in BioRender.

Our work in birds has shown that common changes in mitochondrial physiology and metabolism have arisen across many species at high altitude. Some evolved changes in mitochondrial physiology depend on the duration of evolutionary time at high altitude, with the most pronounced changes exhibited in the most established species.


Common differences in metabolic enzyme activities and myoglobin content in the flight muscle were observed across several species of high-altitude waterfowl compared to their close relatives from low altitudes, shown as orange arrows in the figure above (Dawson et al. 2020).

Key Publications:

Dawson NJ, Scott GR. 2022. Adaptive increases in respiratory capacity and O2 affinity of subsarcolemmal mitochondria from skeletal muscle of high-altitude deer mice. FASEB J. 36, e22391.

Mahalingam S, Cheviron ZA, Storz JF, McClelland GB, Scott GR. 2020. Chronic cold exposure induces mitochondrial plasticity in deer mice native to high altitudes. J Physiol. 598, 5411-5426.

Dawson NJ, Alza L, Nandal G, Scott GR, McCracken KG. 2020. Convergent changes in muscle metabolism depend on duration of high-altitude ancestry across Andean waterfowl. eLife. 9, e56259.

Scott GR, Guo KH, Dawson NJ. 2018. The mitochondrial basis for adaptive variation in aerobic performance in high-altitude deer mice. Integr Comp Biol. 58, 506-518.

Dawson NJ, Lyons SA, Henry DA, Scott GR. 2018. Effects of chronic hypoxia on diaphragm function in deer mice native to high altitude. Acta Physiol. 223, e13030.

Mahalingam S, McClelland GB, Scott GR. 2017. Evolved changes in the intracellular distribution and physiology of muscle mitochondria in high-altitude native deer mice. J Physiol. 595, 4785-4801.

Du SNN, Khajali F, Dawson NJ, Scott GR. 2017. Hybridization increases mitochondrial production of reactive oxygen species in sunfish. Evolution. 71, 1643-1652.

Dawson NJ, Ivy CM, Alza L, Cheek R, York JM, Chua B, Milsom WK, McCracken KG, Scott GR. 2016. Mitochondrial physiology in the skeletal and cardiac muscles is altered in torrent ducks, Merganetta armata, from high altitudes in the Andes. J Exp Biol. 219, 3719-3728.

Du SNN, Mahalingam S, Borowiec BG, Scott GR. 2016. Mitochondrial physiology and reactive oxygen species production are altered by hypoxia acclimation in killifish (Fundulus heteroclitus). J Exp Biol. 219, 1130-1138.

Lui MA, Mahalingam S, Patel P, Connaty AD, Ivy CM, Cheviron ZA, Storz JF, McClelland GB, Scott GR. 2015. High-altitude ancestry and hypoxia acclimation have distinct effects on exercise capacity and muscle phenotype in deer mice. Am J Physiol Reg Integr Comp Physiol. 308, R779-R791.